A natural start was The Legend of Zelda: A Link To The Past. (I believe the Magic Man is working on a multiplayer interpretation if you're interested in joining his test server.)
Next, I satisfied my curiosity about Alundra. While it sparked some boss and dungeon ideas, it appears to have chosen the wrong perspective for its jumping puzzles.
I can remember playing Star Tropics back in the NES days. The single-tile jump and its puzzles look useful.
Dwarf Complete doesn't offer action, but some of the puzzles are interesting.
Engage to Jabberwock offers some of the arcade action I'm looking for. Unfortunately, I can already hear the potential whining about difficulty when multiple enemies are on the screen. (It would probably be coupled with a misinterpretation of the form of permadeath I have planned.)
...I just thought of Where We Remain so I'll toss that in too. ;)
Any more suggestions?